#acl TechnicalServicesGroup:read,write,delete,revert All:read
= Research Computing and HPC =
<<TableOfContents(3)>>

== Introduction to HPC clusters ==
 * [[https://kb.oakland.edu/uts/whatHPC|What is an HPC Cluster]]
 * [[https://kb.oakland.edu/uts/HPCMatilda|HPC cluster at Oakland]]

== Using the Cluster ==
 * [[HPCAccounts|Requesting a Matilda Account]]
 * [[https://kb.oakland.edu/uts/HPCLogin|Logging in to the Matilda HPC Cluster]]
 * [[HPCMobaXterm|Logging into Matilda with MobaXterm]]
 * [[HPCPuTTY|Logging into Matilda with PuTTY]]
 * [[https://kb.oakland.edu/uts/HPCModules|Cluster Modules System]]
 * [[HPCSoftware|Available HPC Software]]
 * [[HPCJobs|Launching and Controlling Jobs]]
 * [[HPCSbatch|SBATCH Options]]
 * [[HPCJobScripts|Job Script Examples]]

== Data Management ==
 * [[https://kb.oakland.edu/uts/HPCStorage|Cluster Storage]]
 * [[https://kb.oakland.edu/uts/HPCFiles|Moving Files]]
 * [[https://kb.oakland.edu/uts/HPCScratch|Scratch File Management]]
 * [[https://kb.oakland.edu/uts/HPCGlobus|Globus Data Transfers]]
 * [[HPCtmp|TMP management]]
 * [[HPCscratchMon|Scratch Monitoring]]
 * [[HPCacls|Granting Special Permissions]]

== Application Specific Help ==
 * [[HPCAlphaFold|AlphaFold]]
 * [[HPCConda|Conda]]
 * [[HPCGaussian|Gaussian]]
 * [[HPCJupyter|Jupyter Notebook Basics]]
 * [[HPCJupyterMPI|Jupyter Notebook MPI]]
 * [[HPCJupyterSLURM|Jupyter Notebook and SLURM]]
 * [[HPCMatlab|MATLAB]]
 * [[HPCProkSeq|ProkSeq]]

== System Status ==
 * [[https://kb.oakland.edu/uts/HPCChangeLog|HPC Change Log]]

== MSU iCER HPCC Buy-in ==
 * [[https://kb.oakland.edu/uts/MSU_iCER_HPCC_Research_Cluster|MSU HPCC Buy-in Nodes]]