#acl TechnicalServicesGroup:read,write,delete,revert All:read = Research Computing and HPC = <<TableOfContents(3)>> == Introduction to HPC clusters == * [[https://kb.oakland.edu/uts/whatHPC|What is an HPC Cluster]] * [[https://kb.oakland.edu/uts/HPCMatilda|HPC cluster at Oakland]] * [[https://kb.oakland.edu/uts/HPCPricing|Matilda HPC Base Allocation and Rates]] * [[https://kb.oakland.edu/uts/HPCFAQ|Matilda Rate FAQ]] * [[https://kb.oakland.edu/uts/HPCWorkshops|HPC Training Workshops]] == Using the Cluster == * [[HPCAccounts|Requesting a Matilda Account]] * [[https://kb.oakland.edu/uts/HPCLogin|Logging in to the Matilda HPC Cluster]] * [[HPCMobaXterm|Logging into Matilda with MobaXterm]] * [[HPCPuTTY|Logging into Matilda with PuTTY]] * [[https://kb.oakland.edu/uts/HPCModules|Cluster Modules System]] * [[HPCSoftware|Available HPC Software]] * [[HPCJobs|Launching and Controlling Jobs]] * [[HPCSbatch|SBATCH Options]] * [[HPCJobScripts|Job Script Examples]] * [[HPCJobSteps|Using Job Steps]] == MPI Parallel Processing == * [[https://kb.oakland.edu/uts/HPCMPI|MPI on Matilda]] * [[https://kb.oakland.edu/uts/HPCopenmpi|OpenMPI]] * [[https://kb.oakland.edu/uts/HPCmpich|MPICH]] == Data Management == * [[https://kb.oakland.edu/uts/HPCStorage|Cluster Storage]] * [[https://kb.oakland.edu/uts/HPCFiles|Moving Files]] * [[https://kb.oakland.edu/uts/HPCScratch|Scratch File Management]] * [[https://kb.oakland.edu/uts/HPCGlobus|Globus Data Transfers]] * [[HPCtmp|TMP management]] * [[HPCscratchMon|Scratch Monitoring]] * [[HPCacls|Granting Special Permissions]] * [[HPCumask|Changing Default Permissions]] == Job and Account Monitoring == * [[https://kb.oakland.edu/uts/HPCSlurmTools|SLURM Monitoring Commands]] * [[https://kb.oakland.edu/uts/HPCPowertools|HPC Powertools]] * [[https://kb.oakland.edu/uts/HPCNodeMonitoring|On-Node Monitoring]] == Application Specific Help == * [[HPCAlphaFold|AlphaFold]] * [[HPCConda|Conda Essentials]] * [[HPCCondaExport|Conda: Importing/Exporting Environments]] * [[HPCConverge|Converge]] * [[HPCDMTCP|DMTCP]] * [[HPCGaussian|Gaussian]] * [[HPCParallel|GNU Parallel]] * [[HPCJupyter|Jupyter Notebook and Lab Basics]] * [[HPCJupyterMPI|Jupyter Notebook MPI]] * [[HPCJupyterSLURM|Jupyter Notebook and SLURM]] * [[HPCLabGym|LabGym]] * [[HPCMatlab|MATLAB]] * [[HPCSingularity|Singularity and Docker Containers]] * [[HPCProkSeq|ProkSeq]] * [[HPCVisit|Visit]] == Troubleshooting == * [[HPCTroubleConda|Conda and Python]] == MATLAB Installation Help == * [[HPCMatlabInstall|MATLAB Installation]] == Mathematica Help == * [[HPCMathematicaOnline|Mathematica Online]] * [[HPCMathematicaNet|Mathematica Site Network]] * [[HPCMathematicaHome|Mathematica Home License]] == System Status == * [[https://kb.oakland.edu/uts/HPCChangeLog|HPC Change Log]] * [[HPCFeatureUpdates|HPC Feature Updates]] == MSU iCER HPCC Buy-in == * [[https://kb.oakland.edu/uts/MSU_iCER_HPCC_Research_Cluster|MSU HPCC Buy-in Nodes]]