Available HPC Software

Overview

This resource contains a list of software available through the HPC Cluster modules system. Please note, some titles are licensed to specific user groups and may not be available to the wider research community. These titles are marked with an asterisk (*).

Titles Available

ALSA/1.2.3.2
apache-ant/1.10.8
AlphaFold/20210722
ARPACK/3.7.0
ATLAS/3.10.3
bamUtils/1.0.14
Bazel/3.7.2
BEDTools/2.29.2
Bioconductor/3.12
BioPerl/1.7.2
blacs/openmpi/gcc/64/1.1patch03
BLAS/3.8.0
blas/gcc/64/3.8.0
BLAST/2.10.1
BLAST/2.2.31
Blender/2.90.1
bonnie++/1.98
Bowtie2/2.4.2
Bowtie2/2.4.2lua
bzip2/1.0.6
cairo/1.17.2
cd-hit/4.8.1
cmake-gcc/3.17.3
cm-pmix3/3.1.4
cp2k/8.1
CUDA/10.0.1
CUDA/10.2.2
cuda10.2/blas/10.2.89
cuda10.2/fft/10.2.89
cuda10.2/toolkit/10.2.89
CUDA/11.0
CUDA/11.1.1
cuDNN/7.4.2-cuda10.0
cudnn7.6-cuda10.2/7.6.5.32
cuDNN/8.2.1-cuda11.3
cuDNN/8.0.4-cuda11.0
cURL/7.61.1
DGINN/01202021
DIRAC/19.0-mpi
DIRAC/19.0-omp
dlib/19.21
dlpoly/1.10
dos2unix/7.4.2
EMBOSS/6.6.0
EXP-T/1.5.2
EXP-T/1.5.2-gpu
EXP-T/1.5.2-vanilla
FastTree/2.1.11
Feko/2021.0.1 (*)
ffmpeg/4.3.2
FFTW/3.3.5
FFTW/3.3.5-MPICH
FFTW/3.3.5-OpenMPI
fftw3/openmpi/gcc/64/3.3.8
FFTW/3.3.9
FreeType/2.9.1
Gaussian/g16-B01 (*)
Gaussian/g16-C01 (*)
Gaussian/g16-C01-gpu (*)
gcc5/5.5.0
gdb/8.3.1
get_homologues/3.3.3
Gflags/2.1.2
Git/2.28.0
git-gcc/2.28.0
GL2PS/1.4.0
glib2/2.56.3
GlobalArrays/5.7.2-mpich
GlobalArrays/5.7.2-openmpi
globalarrays/openmpi/gcc/64/5.7
glog/0.3.5
golang/1.16.3
GraphicsMagick/1.3.34
guile/1.8.8
HarfBuzz/1.3.0
hdf5/1.10.1
HDF5/1.10.5
hdf5_18/1.8.21
HipSTR/0.7
HMMER/2.3.2
htop/3.0.5
hwloc/1.11.11
HyPhy/2.5.27
ICU/64.1
iozone/3_487
java/OpenJDK/1.8.0.242
keras-py37-cuda10.2-gcc/2.3.1
knime/4.4.1
Kraken/1.1.1
lammps/29Oct2020
LAPACK/3.8.0
lapack/gcc/64/3.8.0
leveldb/1.23
libaec/1.0.2
libarchive/3.5.1
libcanberra/0.30
libevent/2.1.8
libfabric/1.9.0
libffi/3.1.21
libgcrypt/1.9.4
LibGD/2.2.5
libgpg-error/1.42
libHaru/2.3.0
libjpeg-turbo/1.5.3
libogg/1.3.2
libtool/2.4.6
libvorbis/1.3.7
libpng/1.6.34
libpq/12.4
LibTIFF/4.0.9
libXpm/3.5.12
LINTRE/082020
lmdb/0.9.28
lua/5.1.5
lua/5.3.4
MAFFT/7.471
MAFFT/7.480
MATLAB/R2021a
matplotlib/3.4.2-py37
matplotlib/3.3.4-py387
matplotlib/3.3.4-py390
MCL-edge/14-137
MEGA/10.2.4.1
miniconda3/4.9.2
ml-pythondeps-py37-cuda10.2-gcc/4.0.8
MPICH/3.2.1
MPICH/3.3.2
mpich/ge/gcc/64/3.3.2
MUSCLE/3.8.31
mvapich2/2.0
mvapich2/gcc/64/2.3.2
nccl2-cuda10.2-gcc/2.6.4
ncurses/6.2
netcdf/gcc/64/gcc/64/
netcdf/gcc/64/gcc/64/4.7.3
netperf/2.7.0
networkx/2.5-py368
networkx/2.5-py375
networkx/2.5-py387
networkx/2.5-py390
newick-utils/1.6-enabled-extra
NumPy/1.20.1-py387
NumPy/1.20.1-py390
NVIDIA-HPC-SDK/nvhpc/21.1
NVIDIA-HPC-SDK/nvhpc-byo-compiler/21.1
NVIDIA-HPC-SDK/nvhpc-nompi/21.1
NWChem/7.0.0-mpich
NWChem/7.0.0-openmpi
NWChem/7.0.2-gpu-mpich-IB
NWChem/7.0.2-omp-cuda102-newer
NWChem/7.0.2-openmpi-cuda102
Octave/5.2.0
OpenBLAS/3.3.5
openblas/dynamic/0.3.7
OpenCV/4.1.0
OpenCV/4.5.1.48-py387
OpenCV/4.5.1.48-py390
OpenFace/2.2.0
OpenFOAM/OpenFOAM-v2012
OpenMPI/4.0.2
OpenMPI/4.0.5
openmpi/gcc/64/1.10.7
OrthoMCL/2.0.9
ou-git/2.24.0
p7zip/16.02
pandas/1.3.1-py37
pandas/1.2.3-py387
pandas/1.2.3-py390
parallel/20190922
Perl/5.32.0
PGAP/1.2.1
PHYLIP/3.697
PhyloBayes/4.1c
PhyML/3.3
pigz/2.6
pixman/0.40.0
PMIx/2.1.1
PMIx/2.2.4
PortAudio/19-30
PosiGene/0.1
PRANK/170427
ProGraphMSA/20130709
Prokka/1.12
proteinortho/6.0.23
protobuf3-gcc/3.8.0
ProtTest/3.4.2
Psi4/1.3.2
Python/2.7.18
Python/3.6.8-emcee
Python/3.7.3
Python/3.8.7
Python/3.9.0
PyTorch/1.8.0-py387-cuda11
PyTorch/1.8.0-py390-cuda11
PyTorch/1.7-py36-cuda11
pytorch-py37-cuda10.2-gcc/
pytorch-py37-cuda10.2-gcc/1.5.1
qrupdate/1.1.2
R/4.0.1
R/4.0.2
R/4.0.3
ragel/6.10
RAxML/8.2.12
readline/7.0
ReSpect/5.1.0_beta
Roary/3.13.0
RSEM/1.3.3
SAMtools/1.11
ScaLAPACK/2.0.2-mpich
ScaLAPACK/2.0.2-openmpi
scikitLearn/0.24.2-py387
scikitLearn/0.21.3-py387
scikitLearn/0.24.2-py390
scikitLearn/0.21.3-py390
SciPy/1.7.1-py37
SciPy/1.6.1-py387
SciPy/1.6.1-py390
Seq-Gen/1.3.4
Singularity/3.7.3
Singularity/2.6.0
SlippageSim/20130114
snappy/1.1.7
SoX/14.4.2
suitesparse/4.4.6
Tacotron-2/01192021
Tacotron-2/02082021
Tacotron-2/03262021-py368
tbl2asn/1.0
TensorFlow/2.5.0-py390-cuda1111
TensorFlow/2.4.1-py385-cuda1022
tensorflow2-py37-cuda10.2-gcc/2.2.0
tensorflow-py37-cuda10.2-gcc/1.15.3
TensorRT/8.0.1.6-cuda113-cudnn82
TensorRT/7.0.0.11-cuda102-cudnn76
TRE/0.8.0
Treerecs/1.2
TurboJPEG/1.5.3
TURBOMOLE/7.4 (*)
ucx/1.6.1
VCFtools/0.1.16
WebP/1.0.0
yasm/1.3.0

License Restricted Software

The following are titles from the above list where certain user group licensing restrictions may apply:

Feko/2021.0.1 (*)
Gaussian/g16-x (*)
TURBOMOLE/7.4 (*)


CategoryHPC