Available HPC Software

Contents

Overview

This resource contains a list of software available through the HPC Cluster modules system on the Matilda HPC Cluster. Please note, some titles are licensed to specific user groups and may not be available to the wider research community. These titles are marked with an asterisk (*).

Last Update: 2023-04-24 08:19:38

Titles Available

A B C D E F G H I J-K L M N O P Q-R S T U-Z

A

AlphaFold/20210722
AlphaFold/2.2.0
ALSA/1.2.3.2
apache-ant/1.10.8
apr/1.7.0
apr-utils/1.6.1
ARPACK/3.7.0
ATLAS/3.10.3
AutoDock/1.5.3-cuda1111
AutoDock/4.2.6
AutoDock-Vina/1.2.3-py390

B

bamUtils/1.0.14
Bazel/3.7.2
BEDTools/2.29.2
Bioconductor/3.12
BioPerl/1.7.2
blacs/openmpi/gcc/64/1.1patch03
BLAS/3.8.0
blas/gcc/64/3.8.0
BLAST/2.10.1
BLAST/2.2.26
BLAST/2.2.31
Blender/2.90.1
Blender/3.3.1
bonnie++/1.98
Bowtie2/2.4.2
Bowtie2/2.4.2lua
bzip2/1.0.6

C

cairo/1.17.2
Carla/0.9.11-py387
Carla/0.9.13-py387
cd-hit/4.8.1
ChronusQ/0.5.0
chrpath/0.16.7
cmake-gcc/3.17.3
cmake-gcc/3.21.2
cm-pmix3/3.1.4
cp2k/8.1
CUDA/10.0.1
CUDA/10.2.2
cuda10.2/blas/10.2.89
cuda10.2/fft/10.2.89
cuda10.2/toolkit/10.2.89
CUDA/11.0
CUDA/11.1.1
CUDA/11.2
cuDNN/7.4.2-cuda10.0
cudnn7.6-cuda10.2/7.6.5.32
cuDNN/8.0.4-cuda11.0
cuDNN/8.2.1-cuda11.3
cURL/7.61.1

D

DejaGnu/1.6.1
DGINN/01202021
DIRAC/18.0-mpich
DIRAC/19.0-mpi
DIRAC/19.0-omp
DIRAC/22.0-mpich
dlib/19.21
dlpoly/1.10
dos2unix/7.4.2
doxygen/1.9.5

E

e2fsprogs/1.46.2
Eigen/3.4.0
EMBOSS/6.6.0
EXP-T/1.5.2
EXP-T/1.5.2-gpu
EXP-T/1.5.2-vanilla
EXP-T/1.7.0-mpich

F

FastTree/2.1.11
Feko/2021.0.1
ffmpeg/4.3.2
FFTW/3.3.5
FFTW/3.3.5-MPICH
FFTW/3.3.5-OpenMPI
FFTW/3.3.9
fftw3/openmpi/gcc/64/3.3.8
FreeType/2.9.1

G

gcc5/5.5.0
gdb/9.2
GeneSeqer/20220620
gensim/4.1.2-py37
gensim/4.1.2-py387
gensim/4.1.2-py390
get_homologues/3.3.3
Gflags/2.1.2
git-gcc/2.29.2
git-gcc/2.31.1
GL2PS/1.4.0
glib2/2.56.3
GlobalArrays/5.7.2b-openmpi
GlobalArrays/5.7.2-mpich
GlobalArrays/5.7.2-openmpi
globalarrays/openmpi/gcc/64/5.7
globus-cli/3.5.0-py368
glog/0.3.5
GLPK/4.65
GLPK/5.0
glxUtils/8.4.0.5
gmp/6.1.2
gnuplot/5.4.4
golang/1.16.3
GraphicsMagick/1.3.34
gsl/2.7.1
gstreamer/1.18.4
gstreamer1-plugins-good/1.16.1
guile/1.8.8

H

HarfBuzz/1.3.0
hdf5/1.10.1
HDF5/1.10.5
hdf5_18/1.8.21
HipSTR/0.7
HMMER/2.3.2
HMMER/3.3.2-openmpi
htop/3.0.5
hwloc/1.11.11
hwloc2/2.7.1
HyPhy/2.5.27
Hypre/1.0
Hypre/2.23.0

I

ICU/64.1
ImageMagick/7.1.0
intel-cluster-runtime/ia32/2018.4
intel-cluster-runtime/ia32/2019.6
intel-cluster-runtime/intel64/2018.4
intel-cluster-runtime/intel64/2019.6
intel/compiler/32/2019/19.0.5
intel/compiler/64/2019/19.0.5
intel/mkl/64/2019/5.281
intel/mpi/64/2019/5.281
intel-tbb-oss/ia32/2020.3
intel-tbb-oss/intel64/2020.3
iozone/3_490
iperf/3.7

J-K

java/OpenJDK/1.8.0.242
kaldi/20220214
keras/2.3.1-py387
keras-py37-cuda10.2-gcc/2.3.1
knime/4.4.1
Kraken/1.1.1

L

LAME/3.100
lammps/29Oct2020
lammps/29Sep2021
LAPACK/3.8.0
LAPACK/3.9.0
leveldb/1.23
libaec/1.0.2
libao/1.2.0
libarchive/3.5.1
libcanberra/0.30
libevent/2.1.8
libfabric/1.15.2
libfabric/1.9.0
libffi/3.1.21
libgcrypt/1.9.4
LibGD/2.2.5
libglvnd/1.4.0
libgpgcrypt/1.42
libgpg-error/1.42
libHaru/2.3.0
libid3tag/0.15.1b
libjpeg-turbo/1.5.3
libnuma/2.0.12
libogg/1.3.5
libpng/1.6.34
libpq/12.4
LibTIFF/4.0.9
libtool/2.4.6
libvorbis/1.3.7
libxkbcommon-x11/1.4.0
libXpm/3.5.12
LINTRE/082020
lmdb/0.9.28
lua/5.1.5
lua/5.3.4
lz4/1.9.3

M

MAD/0.15.1b
MAFFT/7.471
MAFFT/7.480
MAFFT/7.490
MAGMA/2.6.2
MATLAB/R2021a
MATLAB/R2021b
MATLAB/R2022a
MATLAB/R2022b
matplotlib/3.3.4-py387
matplotlib/3.3.4-py390
matplotlib/3.4.2-py37
mcl/14.137
MCL-edge/14-137
MEGA/10.2.4.1
mesa-dri-drivers/20.1.4.1
meson/0.57.1-py387
meson/0.61.3-py390
miniconda3/4.10.3-py385
miniconda3/4.9.2-py385
ml-pythondeps-py37-cuda10.2-gcc/4.0.8
ml-pythondeps-py37-cuda10.2-gcc/4.0.8-sklearn
mpi4py/3.1.3-py390
MPICH/3.2.1
MPICH/3.3.2
mpich/ge/gcc/64/3.3.2
MUSCLE/3.8.31
mvapich2/2.0
mvapich2/gcc/64/2.3.4

N

nccl2-cuda10.2-gcc/2.6.4
ncurses/6.2
netcdf/gcc/64/gcc/64/4.7.3
netperf/2.7.0
netstat/2.10
networkx/2.5-py368
networkx/2.5-py375
networkx/2.5-py387
networkx/2.5-py390
newick-utils/1.6-enabled-extra
NGSolve/6.2.2105-py390
NGSolve/6.2.2202-mpich-py390
NGSolve/6.2.2202-py390
ninja/1.10.2
NLopt/2.7.1
nmap/7.91
NumPy/1.19.5-py368
NumPy/1.19.5-py390
NumPy/1.20.1-py387
NumPy/1.20.1-py390
NumPy/1.21.1-py37
NVIDIA-HPC-SDK/nvhpc/21.1
NVIDIA-HPC-SDK/nvhpc/21.11
NVIDIA-HPC-SDK/nvhpc-byo-compiler/21.1
NVIDIA-HPC-SDK/nvhpc-byo-compiler/21.11
NVIDIA-HPC-SDK/nvhpc-nompi/21.1
NVIDIA-HPC-SDK/nvhpc-nompi/21.11
NWChem/7.0.0-mpich
NWChem/7.0.0-openmpi
NWChem/7.0.0-openmpi-c
NWChem/7.0.0-openmpi-cuda102
NWChem/7.0.2-122021-mpich
NWChem/7.0.2-gpu-mpich-IB
NWChem/7.0.2-openmpi
NWChem/7.0.2-openmpi-cuda102

O

Octave/5.2.0
OpenBLAS/0.3.10
OpenBLAS/0.3.3.5
OpenBLAS/3.3.5
openblas/dynamic/0.3.7
OpenCV/3.4.3
OpenCV/4.1.0
OpenCV/4.5.1.48-py387
OpenCV/4.5.1.48-py390
OpenFace/2.2.0
OpenFOAM/OpenFOAM-v2012
openmpi3/gcc/64/3.1.6
OpenMPI/4.0.5
OpenMPI/4.1.1
OpenMPI/4.1.1c
openmpi/gcc/64/1.10.7
OpenSeq2Seq/18.12-gpu-py368
Opus/1.3
opusfile/0.11
OrthoMCL/2.0.9
ORTHOSCOPE-star/1.0

P

p7zip/16.02
PAL2NAL/14.0
pandas/1.1.5-py368
pandas/1.2.3-py387
pandas/1.2.3-py390
pandas/1.3.1-py37
parallel/20190922
parallel/20210622
ParaView/5.10.1-mpi-py390
parso/0.8.3-py387
parso/0.8.3-py390
Perl/5.32.0
PGAP/1.2.1
PGI/18.10
phoronix/10.8.4
php-cli/7.4.32
PHYLIP/3.697
PhyloBayes/4.1c
PhyML/3.3
pigz/2.6
pixman/0.40.0
PMIx/2.1.1
PMIx/2.2.4
PortAudio/19-30
PortAudio/19.7.0
PosiGene/0.1
powertools/1.0
powertools/1.0-py390
PRANK/170427
ProGraphMSA/20130709
Prokka/1.12
ProkSeq/2.0-py368
proteinortho/6.0.23
protobuf3-gcc/3.8.0
ProtTest/3.4.2
Psi4/1.3.2
psipred/4.0
PyCharm/2022.1.3-py368
pyLDAvis/3.3.1-py387
pyLDAvis/3.3.1-py390
Python/2.7.18
Python/3.6.8-emcee
Python/3.7.3
Python/3.8.7
Python/3.9.0
PyTorch/1.7-py36-cuda11
PyTorch/1.8.0-py387-cuda11
PyTorch/1.8.0-py390-cuda11
pytorch-py37-cuda10.2-gcc/1.5.1
pytorch-py37-cuda10.2-gcc/1.5.1-sklearn

Q-R

qrupdate/1.1.2
R/3.6.3
R/4.0.1
R/4.0.2
R/4.0.3
R/4.1.0
ragel/6.10
RAxML/8.2.12
readline/7.0
readline/8.1
ReSpect/5.1.0_beta
Roary/3.13.0
Roary/3.13.0b
RSEM/1.3.3

S

SAMtools/1.11
ScaLAPACK/2.0.2-mpich
ScaLAPACK/2.0.2-openmpi
ScaLAPACK/2.1.0-openmpi
scikitLearn/0.21.3-py387
scikitLearn/0.21.3-py390
scikitLearn/0.24.2-py387
scikitLearn/0.24.2-py390
SciPy/1.6.1-py387
SciPy/1.6.1-py390
SciPy/1.7.1-py37
screen/4.9.0
Search-Based-LDA/1.0
Search-Based-LDA/1.0-mod
SEG/10202020
Seq-Gen/1.3.4
Singularity/2.6.0
Singularity/3.7.3
Singularity/3.9.6
SlippageSim/20130114
snappy/1.1.7
soundfile/0.10.3-py387
soundfile/0.10.3-py390
SoX/14.4.2
spaCy/3.4.2-py387
spafe/0.1.2-py387
spafe/0.1.2-py390
sqlite3/3.35.4
subversion/1.10.7
suitesparse/4.4.6

T

Tacotron-2/01192021
Tacotron-2/02082021
Tacotron-2/03262021-py368
Tacotron-2/09162021-py368
tbl2asn/1.0
tcl/8.6.11
TensorFlow/2.4.1-py387-cuda1022
TensorFlow/2.5.0-py390-cuda1111
tensorflow2-py37-cuda10.2-gcc/2.2.0
tensorflow-py37-cuda10.2-gcc/1.15.3
TensorRT/7.0.0.11-cuda102-cudnn76
TensorRT/8.0.1.6-cuda113-cudnn82
tk/8.6.11
TORQUE/4.2.10
transformers/4.16.2-py387
TRE/0.8.0
Treerecs/1.2
trimAl/1.2r59
TTS/0.3.1-py368
TurboJPEG/1.5.3
TURBOMOLE/7.4

U-Z

ucx/1.8.1
ucx/1.9.0
utf8proc/2.7.0
VCFtools/0.1.16
WavPack/5.1.0
WebP/1.0.0
xcb-util/0.4.0
xcb-util-image/0.4.0
xcb-util-keysyms/0.4.0
xcb-util-renderutil/0.3.9
xcb-util-wm/0.4.1
yasm/1.3.0

License Restricted Software

The following are titles from the above list where certain user group licensing restrictions may apply: 

Feko/2021.0.1 (*)
Gaussian/g16-x (*)
TURBOMOLE/7.4 (*)

CategoryHPC