Research Computing and HPC

Introduction to HPC clusters

• What is an HPC Cluster

• HPC cluster at Oakland

• HPC Training Workshops

Using the Cluster

• Requesting a Matilda Account

• Logging in to the Matilda HPC Cluster

• Logging into Matilda with MobaXterm

• Logging into Matilda with PuTTY

• Cluster Modules System

• Available HPC Software

• Launching and Controlling Jobs

• SBATCH Options

• Job Script Examples

• Using Job Steps

MPI Parallel Processing

• MPI on Matilda

• OpenMPI

• MPICH

Data Management

• Cluster Storage

• Moving Files

• Scratch File Management

• Globus Data Transfers

• TMP management

• Scratch Monitoring

• Granting Special Permissions

• Changing Default Permissions

Job and Account Monitoring

• SLURM Monitoring Commands

• HPC Powertools

• On-Node Monitoring

Application Specific Help

• AlphaFold

• Conda

• Gaussian

• Jupyter Notebook Basics

• Jupyter Notebook MPI

• Jupyter Notebook and SLURM

• Singularity and Docker Containers

• MATLAB

• ProkSeq

MATLAB Installation Help

• MATLAB Installation

System Status

• HPC Change Log

• HPC Feature Updates

MSU iCER HPCC Buy-in

• MSU HPCC Buy-in Nodes