Research Computing and HPC

Introduction to HPC clusters

• What is an HPC Cluster

• HPC cluster at Oakland

• Matilda HPC Base Allocation and Rates

• Matilda Rate FAQ

• HPC Training Workshops

Using the Cluster

• Requesting a Matilda Account

• Logging in to the Matilda HPC Cluster

• Logging into Matilda with MobaXterm

• Logging into Matilda with PuTTY

• Cluster Modules System

• Available HPC Software

• Launching and Controlling Jobs

• SBATCH Options

• Job Script Examples

• Using Job Steps

MPI Parallel Processing

• MPI on Matilda

• OpenMPI

• MPICH

Data Management

• Cluster Storage

• Moving Files

• Scratch File Management

• Globus Data Transfers

• TMP management

• Scratch Monitoring

• Granting Special Permissions

• Changing Default Permissions

Job and Account Monitoring

• SLURM Monitoring Commands

• HPC Powertools

• On-Node Monitoring

Application Specific Help

• AlphaFold

• Conda Essentials

• Conda: Importing/Exporting Environments

• Converge

• DMTCP

• Gaussian

• GNU Parallel

• Jupyter Notebook and Lab Basics

• Jupyter Notebook MPI

• Jupyter Notebook and SLURM

• LabGym

• MATLAB

• Singularity and Docker Containers

• ProkSeq

• Visit

Troubleshooting

• Conda and Python

MATLAB Installation Help

• MATLAB Installation

Mathematica Help

• Mathematica Online

• Mathematica Site Network

• Mathematica Home License

System Status

• HPC Change Log

• HPC Feature Updates

MSU iCER HPCC Buy-in

• MSU HPCC Buy-in Nodes